Hi
I am trying to use the latest version of featureCounts (Subread package version 2.0.0) with the following command (based on Chothani,...
7 results in 0.0026 seconds.
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featureCounts output format error
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featureCounts error
I am running into a featureCounts error that has been referred to in prior reports (https://www.biostars.org/p/213666/ and http://seqanswers.com/foru...Last edited by GenoMax; 03-19-2017, 05:11 PM. -
Subread segmentation faults on Scientific Linux
Hi
I am running Subread on scientific linux on a HPC cluster with a GPFS file system. With big FASTQ (>35M reads) subread falls over... -
featureCounts Error: SAM_pairer_osr_next_name: Assertion `rlen < 1024' failed
I get this error when I run featureCounts on an output file generated by STAR as BAM SortedByCoordinate:
|| Process BAM file xxx... ||... -
bowtie2 local alignment
Hi,
What are the disadvantage of local alignment mode in bowtie2?
We have a data set with very high quality reads. But when running... -
DESeq2 depends on GeneOrder?
Dear all,
currently we are thinking about replacing HTseq count by featureCount from the Subread package. The run time is shortened considerably,... -
subread
Hello
Has anyone of you allready tried subread ("subread: a superfast read aligner": http://sourceforge.net/projects/subrea...Last edited by hanshart; 12-04-2011, 03:18 PM.
