Hi,
I have a bam file that includes a big indel and a translocation. I wish to extract a new reference fasta file with the SV (without the deleted...
4 results in 0.0028 seconds.
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extract fast from bam taking SV into account
Last edited by EHC; 03-16-2022, 01:10 AM. -
Need help understanding the method from this paper
I'm trying to somehow follow the method outlined in this paper for calling breakpoints after assembly and mapping to the reference (see Assembly and Validation).... -
Does MUMmer reorder the query sequences?
Hello,
I'm using NUcmer and mgaps from MUMmer to find indels between a reference and a draft genome. The mgaps output is neat and almost... -
BreakDancer empty cfg (no output from bam2cfg)
Hi, everyone, I had spent days to do trouble-shooting on bam2cfg.pl,
breakdancer-1.1_2011_02_21.zip. I had tried some ways to figure out the problem,...Last edited by zhongj; 12-14-2011, 01:50 AM.
