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vitor started a topic Calculating dN/dS with NGS data

in Illumina (Solexa)

07-17-2015, 08:37 AM
Calculating dN/dS with NGS data

Hello,

I have DNA reads mapped in the genome reference in the format .SAM, i need to calculate dN/dS in each ORF.
How can I calculate...

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mm.perrineau started a topic How to know if a SNP is non synonymous using the genome sequence and the gff3 file?

in Bioinformatics

05-29-2015, 12:45 AM
How to know if a SNP is non synonymous using the genome sequence and the gff3 file?

Hi everyone,
Everything is in the title: How to know if a SNP is non synonymous using the genome sequence and the gff3 file?
I have no other...

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Darth Ghisus started a topic Nucleotide to amino acid translation + synonymous/non-synonymous count

in Bioinformatics

09-03-2012, 07:11 AM
Nucleotide to amino acid translation + synonymous/non-synonymous count

Hi everybody,

I'm going to perform a SNP calling using SAMtools.
The source data consist of an invertebrate mitochondrial transcriptome...

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