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piemmea started a topic estimation of non synonymous over synonymous (Ka/Ks) SNPs over genome with RNAseq

in RNA Sequencing

03-15-2013, 12:17 PM
estimation of non synonymous over synonymous (Ka/Ks) SNPs over genome with RNAseq

dear all
I performed RNAseq in closely related plant species and was asked to perform a Ka/Ks estimation of the transcriptome. The problem is,...

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bioinfun started a topic synonymous snps from vcf

in Bioinformatics

05-15-2012, 05:41 AM
synonymous snps from vcf

Hi

Anyone has any ideas how would one find out (programmatically) synonymous and non-synonymous snps from vcf files? I have used mpileup...

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