Hello everyone,
I'm new to the forum and maybe to ... bioinformatics.
I'm studying viral genome insertions into human genome....
8 results in 0.0029 seconds.
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Tablet viewing issue
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can't export complete coverage image from Tablet
Hi everyone
I'm using Tablet to visualize contigs built from velvet but in one case i have a big coverage image that i can't export complete... -
Troubleshoot running coveragestats.py in Tablet (SamTools related)
I recently downloaded Tablet to assess read coverage of my de novo assembly of RNA-Seq of marine snail venom duct tissue. I have tried to run a script... -
Bam Output Mismatch By Contig
I've been looking for something that extracts the %mismatch by contig from a .bam file. (Not unlike the left navigation panel in Tablet does automatically.)...Last edited by crkessen; 06-05-2013, 01:45 PM. -
RNA MiSeq analysis: workflow and software suggestions?
The scenario: I have archaeal RNA MiSeq data (Illumina single end 50 bp reads in fastq files) from two different growth conditions. I would like to calculate... -
bowtie assembly on RNA seq viewer
Hello,
Just did a bowtie assembly on RNAseq data, checked in tablet all looks fine but is there a way to find out the coverage for each... -
Tablet assembly viewer
Hello, I'm trying to run Tablet Assembly Visualization in my remote machine from my local terminal. It doesn't works. Suggestion? Alternatively, how can... -
Using samtools/tablet to find indels
As I understand, the following code should extract indels from a bam file and output them in pileup format:
...Code:samtools pileup -if <ref.fa>
