Hello,
I am trying to build a costumed database, including all reference genomes of fungi, bacteria, archaea, viruses, and Homo sapiens.
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AzizNasr started a topic Kraken2 - unmapped sequences during the first step of building the databasein MetagenomicsKraken2 - unmapped sequences during the first step of building the database
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Metagenomic Taxonomic Profiling (beginner)
Hello, a little bit about myself. I'm a first year bioinformatic grad student who somehow got himself into a mock metagenomic project (there will be an... -
Taxonomy tree conflicts in Greengenes V 13.5
Hi all,
I'm using the Lotus pipeline to investigate 16S stool samples. I assigned taxonomy with Greengenes, SILVA, HITdb , since greengenes was... -
Taxonomy tree conflicts in Greengenes V 13.5
Hi all,
I'm using the Lotus pipeline to investigate 16S stool samples. I assigned taxonomy with Greengenes, SILVA, HITdb , since greengenes was... -
sam2rma Tool in MEGAN
Has anyone been able to use the sam2rma standalone tool provided with MEGAN? I can't seem to get it to perform taxonomic classification, although I can...
