Hi,
3 years ago I downloaded tsv files of indels and SNVs of TCGA samples from the GDC data portal.
Right now I want to find the barcode-id...
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Search filename in the GDC data portal
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Normalisation of RNAseq data from UCSC Xena Browser
Dear all
I am very new to this so apologies in advance..
I am trying to teach myself the basics of R and bioinformatics... -
Postdoc in computational cancer genomics at University of Minnesota
We are looking for a highly motivated candidate specializing in Bioinformatics to join the Computational Cancer Genomics lab of Dr. Rendong Yang in Hormel... -
Postdoctoral Research Associate - Computational cancer genomics - London
The post holder will lead on the analysis and integration of cancer omic data for the newly established Cancer Research UK KHP Centre. The post holder... -
oncoNcRNA: ncRNAs (lncRNAs, miRNAs) with Oncogenic Potentials in Human Cancers
We had released oncoNcRNA, a web portal for explore various ncRNAs (lncRNAs, miRNAs, piRNAs, snoRNAs, tRNAs) with oncogenic potentials in 64 human cancer... -
TCGA gene annotation conversion for RNA-seq datasets
Dear all,
I downloaded some RNA-seq datasets from TCGA but I am not able to convert the gene ids to the current ensembl annotation release.... -
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Challenges in SKIN Cancer data analysis
Skin Cancer is one of the most common cancers and close to 4 million cases occur globally each year. According to Skin Cancer Foundation, in the last... -
Scalpel indel caller running slowly on TCGA WGS BAM files
Hi members,
I am trying to use the Scalpel indel caller (http://scalpel.sourceforge.net/) to find indels in WGS files from TCGA. But am... -
Multiple files with same barcode in TCGA
Does anyone know what differentiates the bam files from samples with the same barcode? in TCGA For example, this sample (TCGA-D7-8575-01A-11D-2340-08)... -
Differential expression analysis using DESeq for TCGA data
Hi.
I’m analysing RNA Sequencing (RNAseq) data of Breast Invasive Carcinoma cases for tumor-normal matched samples downloaded from... -
Differential expression gene list from TCGA level 3 RNASeq V2 datasets downloaded fro
I am interested in calculating differential expression of genes for tumor vs. normal samples from RNASeq V2 level 3 datasets for TCGA (downloaded from... -
TCGA RNAseq BAM Files
Hi
My PI is interested in acquiring BAM files of RNAseq of breast cancer/cancer tumor/cell lines. I know TCGA may have them, how can we... -
Data from servers Accessible on IGV
Hello, I have some questions about the server data accessible through IGV
1. When you upload files from the server "Body Map 2.0 (Illumina... -
TCGA - missing file for LAML project
Hello,
Not sure this is the best place to post this question, but perhaps somebody has the answer. For the analysis I am doing, I have...
