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PCA plots based on nucleotide word frequency (k-mer) of assembled contigs &/or raw re
Which utility package (preferable web-based) is available to generate PCA plots based on nucleotide word frequency (k-mer) of assembled contigs &/or... -
NORMALIZED tetranucleotides frequency
I want to do a PCA of metagenomic contigs based on tetranucleotide composition. Commonly I read in the literature the use of NORMALIZED tetranucleotide... -
How do I calculate tetranucleotide frequencies?
I'd like to calculate the tetranucleotide frequencies of my contigs and the bin them based on shared tetranucleotide frequencies. Can anyone recommend...
