Hi,
I'm looking for some help on the analysis of a multi-factor design with DESeq2.
I have a 4-factor experiment:
Groups:...
9 results in 0.0023 seconds.
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time course multi-factor design with DESeq2
Last edited by Neytiri; 05-04-2017, 06:53 AM. -
deseq2: analysis of time-series with 2 timepoints with control for only 1
Hi all
I need advice on how to analyse my complicated design RNAseq data with Deseq2.
I have 3 biological replicates, 2... -
interactions with DESeq2 in a time-course analysis
Dear all,
we're having a time course data set of 8 TP (0, 16,24,30,48,72,90, and 100 hours).
We would like to test for genes which...Last edited by frymor; 11-05-2015, 03:21 AM. -
SOM (Self-organising Maps) to identify expression trends in time-course data
Hi,
I am curious to know if anyone has employed SOM (Self-organising Maps) to identify expression trends in time-course data (RNASeq/Exome... -
Cuffdiff timecourse replicates
I am trying to figure out if CuffDiff handles replicates in its timecourse option.
so it would be something like this...
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Time-course analysis of sequencing count data
Hi,
I am trying to find information on time-course analysis of sequencing count data (eg, RNA-seq). I was told the latest version of edgeR... -
can cuffdiff handle the samples with different treatments and a time series?
Hi friends,
Recently, I got a problem, I have two treated samples, one is KO, and the other is WT (as control), and the two samples also have... -
Ref column for 2 factor RNA-Seq time course
Dear all,
I seek some help with normalization strategy for my experiment. I have described the experimental design below.
Tissue... -
cuffdiff output different FPKM if the comparing samples are different
Hi,
Hope someone can kindly help me. I am confused about why the FPKM of a gene is different if different comparing samples are used!...Last edited by rossini; 09-02-2011, 08:18 PM.
