11 results in 0.0021 seconds.
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Incorrect bbmap quality trimming
I am using bbmap to trim bases below a certain quality threshold in a FASTQ file. The file looks fine to me in terms of quality scores, but when I run... -
Comparing bbduk with fastp for quality and adapter trimming
Hi
Has anyone compared results and performance of bbduk vs fastp when it comes to adapter and quality trimming of fastq read files?... -
Multiple indexes per sample how to trim with Trimmomatic?!
Hi all,
I received my HiSeq Illumina RNAseq data and want to run trimmomatic to remove bad quality reads and trim adapters. I have used... -
Trimming seq data using Trimmomatic confirmation
Dear all,
I received my HiSeq Illumina RNAseq data and want to run trimmomatic to remove bad quality reads and trim adapters. I have used... -
Trimming seq data using Trimmomatic confirmation
Dear all,
I received my HiSeq Illumina RNAseq data and want to run trimmomatic to remove bad quality reads and trim adapters. I have used... -
ddRAD, STACKS, and Trimming
Please disregard/delete.
Last edited by Carcharodon; 07-13-2017, 04:51 PM. -
Cutadapt trimming issues
Hi, perhaps someone could advise me on the following issue.
I was trimming my paired-end reads with cut adapt using the following command:... -
Trimmomatic - unknown trimmer error?
Hi all,
I am really struggling with Trimmomatic these days and the frustration level is rising (I have to meet a deadline). For multiple... -
Merging illumina V4 paired end reads
Hi
I am having difficulty understanding how my merged reads are producing a certain amplicon size.
Basically, I have 2 x... -
Prinseq-lite problem
Dear all,
I am using prinseq (v.0.20.4, CentOS) to filter my paried end data with the following commands.
[root@localhost]# perl prinseq-lite.pl...Last edited by kumar03; 12-09-2015, 06:40 PM. -
How to avoid trimming the middle part of the reads
Dear all,
I am new for this Forum. I have the Truseq paired-end DNA data. Each paired end read contains a PCR specific probe sequence in...
