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Kath started a topic FamSeq vs Polymutt vs DeNovoGear

in Bioinformatics

04-24-2013, 01:44 AM
FamSeq vs Polymutt vs DeNovoGear

Hi,

I would like to call variants jointly in a trio, taking pedigree info into account. I have heard of three tools for doing this - FamSeq...

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Kath started a topic Joint variant calling in trios

in Bioinformatics

04-22-2013, 06:21 AM
Joint variant calling in trios

Hello,

I have exome sequencing data for a few sets of trios in which the offspring have phenotypically related but probably genetically...

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Sunil Kamalakar started a topic Figuring out gene pathway/interaction after gene annotation

in Bioinformatics

09-05-2012, 06:09 PM
Figuring out gene pathway/interaction after gene annotation

Hi All,

We have whole genome data for a trio(mom, dad and kid), which we have annotated using snpEff.

Now after annotation,...

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SeekAnswers started a topic Help using Shapeit

in Bioinformatics

06-13-2012, 09:18 AM
Help using Shapeit

I'm trying to infer haplotypes from a trio dataset using shapeit.

I have 3 VCF files for variants which I converted to plink/map PED formats...

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