Hi all,
I am currently using HISAT2 to do read mapping. After having the mapped results, I am planning to only use reads aligned concordantly...
6 results in 0.0020 seconds.
-
HISAT2 reads aligned concordantly exactly 1 time
-
ATAC-seq quality control
Hello,
I am analysing ATAC-seq data for the first time and am wondering what typical values are for:
Total number of reads... -
nonunique read mapping and snp calling
Hi all,
We are having a little debate here that we would like some other insights into.
The problem is that we are doing targeted... -
Filter reads by mappability, unique reads, not more than 1 mismatches
Hi all,
I am working with ChIP-seq data and want to filter the reads with the following criteria: (A) mappable reads; (B) unique alignments (most... -
How many uniquly aligned sequences can we expect?
Hello all,
For Solid RNASeq data, we are getting between 30% - 40% of total raw reads mapping uniquly, using the default parameters of... -
Regarding Unique reads, Unique alignments
I have few questions regarding the best practices that are adopted, in dealing with multiple alignments from a single read and presence of identical reads...
