Hi,
I'm analyzing some Illumina data (HiSeq) using Bioconductor and am curious to look a little bit more at the unmapped reads.
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4 results in 0.0101 seconds.
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eland codes for unmapped reads?
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unmapped reads - bowtie
Hi everybody,
I am running bowtie to analyse my paired-end Illumina data sets. I have two files one from wild type and one from a mutation... -
Handling alignments spanning chromosomes boundaries in BWA
Hi All,
When BWA aligns a read that spans over two chromosomes, it sets the flag as "unmapped" but leaves mapping quality (MAPQ)... -
% unmapped reads
Hi all,
For any solexa run, we see 60-80% passing filter reads, of which 70-90% map to the reference sequence. There are quite a few reads...
