according to the manual's instructions, shown here:
samtools mpileup -q 1 -f ref.fa normal.bam tumor.bam
...
3 results in 0.0028 seconds.
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VarScan2 copynumber output name
Hi. I have been running VarScan2 copynumber
according to the manual's instructions, shown here: -
Error: Invalid format for pileup at line null in varscan2
Hi,
I am using Varscan2 with readcounts like follows
...Code:samtools mpileup -f /home/tsekara/Transcriptomes/trinity5_frameDPcorrected.fa
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varscan2 mpileup2snp output differs from mpileup output
I have a problem understanding the output of VarScan mpileup2snp.
I use samtools mpileup to generate the pileup (samtools 0.1.18).
...
