6 results in 0.0023 seconds.
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Extract neighbourhood bases of a SNP
I have downloaded the COSMIC mutation data (.maf file). Now for each mutation, I want to extract one base to the left and right of all SNPs. How can I... -
Question: NGS SNP data - trouble recomputing INFO values in VCF
Hi all,
I have a VCF file containing 190 samples from two species, with >250 000 SNPs called by Cornell's Genomics Institute. I have... -
How to get SNP abundance from a metagenomic VCF?
So I have a VCF:
...HTML Code:NODE_2672_length_273_cov_23.978022 190 . G T 275 . DP=217;VDB=3.00218e-07;SGB=-0.477013;RPB=0.289765;MQB=6.34926e-08;MQSB=0.867801;BQB=0.982133;MQ0F=0;ICB=0.78125;HOB=0.111111;AC=8;AN=24;DP4=71,91,23,22;MQ=26
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Program that gives summary of substitutions
Hey,
I am looking for a program that gives a summary of base substitutions from a vcf file, e.g. number of A --> T, C --> T, etc.... -
How to get allele frequency histogram from vcf file?
Hi Everyone,
I am new to SEQanswers and the bioinformatics world, and I am looking for some help. I would like to get a count of allele... -
Towards a comprehensive list of tools for use in VCF analysis
Hello seqanswers,
I am interested in compiling, to the degree that we can, a list of potential actions to take in deciding what variants...Last edited by Sarutahiko; 12-18-2013, 05:51 PM.
