Hi Everyone,
So I have human exome data with mean coverage of about 150 X and I wish to apply filtering on VCF file that I obtained...
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varFilter SAMtools max Read Depth
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BMC Bioinformatics: PileLine toolbox to handle genome-position files in NGS studies.
Link to the article in BMC Bioinformatics:
http://www.biomedcentral.com/1471-2105/12/31
PileLine is publicly available at http://s...Last edited by gonvader; 02-11-2011, 04:44 AM.