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janshamsani started a topic TCGA germline variant status in vcf files

in Bioinformatics

11-23-2015, 08:47 PM
TCGA germline variant status in vcf files

Hi,

I have annotated vcf files from TCGA. I'm interested in looking at Germline variants in TCGA samples. The TCGA vcf contains variant...

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genomics_search started a topic problem in opening annovar output file in Varsifter

in Bioinformatics

11-24-2012, 08:38 AM
problem in opening annovar output file in Varsifter

Hi all ,

I ran Annovar and got the output from it. It gives output in CSV format.
Now I need to filter them using Varsifter, which...

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bnfoguy started a topic Parsing a VCF file for indels

in Bioinformatics

07-12-2012, 08:30 AM
Parsing a VCF file for indels

Hello,

I am new to Python and and I am trying to parse a VCF file that has reads containing the flag "INDEL". I want to extract...

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