this was answered . . .
One of the output files of vcf-stats tool, (*.shared), seems to indicate it counts only only sites where the samples...
3 results in 0.0022 seconds.
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what is the meaning of vcf-stats output for shared snps??
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Error using vcf-stats
I am trying to figure out the variant statistics from a vcf file using the command:
For...Code:./vcf-stats NA11881roi_variants.vcf
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questions about vcf-stats output
the output of vcf-stats like this:
...Code:Rows with a call 3264597 SNP alleles 2594406 indel
