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spyf89 · 08-06-2014, 11:31 AM

**UPDATE**

Problem solved. The local version of the .fai index file I was using only contained chromosome 1. Version on the server that I...

skbrimer · 05-30-2014, 12:02 PM

Hello all,

I'm having trouble using samtools to get a consensus of a small viral genome and I'm fairly certian its user error. I am very...

jaavedm · 09-06-2013, 05:43 AM

Hello,

I'm looking for a tool to undo the vcf2fq operation performed by vcfutils.pl in the samtools package.

I have a bunch...

hansdd · 08-12-2012, 08:24 PM

Dear All,

I am running vcfutils.pl varFilter and I have deliberately set all options to very low values to override the defaults so no...

Lspoor · 10-24-2011, 07:19 AM

Hi everyone, I was wondering if you might be able to help me with specifying a minimum read depth when calling consensus sequences?...

Missing chromosomes in vcf output