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No LastGraph file from Velvet
Using VelvetOptimiser v2.2.6 to run a velveth, velvetg (v1.2.10) optimization procedure. Problem is that velvetg does not produce a LastGraph file. Instead...Last edited by drdna; 02-05-2019, 06:03 AM. -
why I have a velvetg blank script?
Hey there,
I came across this really odd situation and have no idea about what to do. I’ve just installed Velvet-1.2.10 and realized that...Last edited by leonardo_ca; 04-05-2018, 12:44 PM. -
Fungal genome de novo assembly and scaffolding
We have data of yeast (Yarrowia)sequenced using Illumina paired-end. Each read R1 and R2 has ~41 million reads. Read length is 150 and insert size is... -
Please help with assembly 2x250 bp with 350 insert
Hi folks,
I have got data generated from 2x250 bp with 350 bp insert for fungal genome assembly. I got very good results from SPAdes,... -
Velvetg not producing output files through Velvetoptimiser
I am running VelvetOptimiser, and the code works through velveth and velvetg, but velvetg does not produce any of the output files that its supposed to.... -
Velvet maximum element with 32bit error
So I have been running velvet on a metagenomic dataset (35Gb flash joined) using 51 Kmer and it failed with the error:
[888200.245154]... -
Velveth output files
Hi, I am basically wondering which files velveth should produce as I have only been produced with Log, Roadmaps and Sequences in the out-dir folder. ... -
help using velvet for de novo assembly
Hi everyone, i'm trying to run de novo assembly using velvet on short (100bp long) paired end reads.
I first ran velveth and it created only two... -
Installation problem of Velvet in Ubuntu 64 and 32 bit
Hi,
This is Shrujan kumar Madadha, i had a problem while installing velvet ave in my both Ubuntu 12.04 LTS 64 and 32 bit systems.... -
Oases assembly merge times out on a cluster
Hi,
I have run velvet-oases on k-mers 21 thru 55, and I am trying to merge the assemblies now. I tried using the velveth --> velvetg...
