Hi all,
So I have this BAM file of transcriptome mapped to genome. I am trying to extract read numbers of genes with the -c argument on...
5 results in 0.0028 seconds.
-
samtools view region not working properly
-
samtools piping problem
Hello SEQanswers,
My ultimate goal is to pipe multiple different regions of a bam file to different commands in a single command line argument.... -
samtools view -l/-r options
Hi everyone!
Is it possible to retrieve mapping results of several specific reads from bam or sam files by referring to the read names?
... -
Comparing two BAM files using SAMtools
Hello, SEQanswers.
This is my first time posting on this forum, I've been lurking for sometime now. I am currently attempting to compare... -
Coverage per nucleotide
We have a mapped RNA-seq but now we want to know how many reads are mapped on each nucleotide in a genome. We went through many many many programs but...
