Hi there,
My apologies if this is a stupid question. I've just moved into RNA-seq analysis, and am trying to figure out some issues....
6 results in 0.0027 seconds.
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Variance modelling in DESeq2
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Too high adjusted P-values analysing RNA-seq count data with limma
Hello!
I'm trying to analyse an RNA-seq count data matrix with limma. From an input table with about 15000 entries, limma gets 1600 differentially...Last edited by IsBeth; 02-19-2016, 11:13 AM. -
Strange dispersion estimates from DESeq
I'm just starting on a new time series dataset (last one for the phd!). There's something odd in happening with the dispersion estimates though. It's... -
Blocking and using contrasts in voom (limma) (RNAseq)
I am having trouble making the contrast matrix when I am using library preparation type (e.g. paired-end, single-end) as an addition variable in the model... -
log normalization of RPKM values in voom
I have a question about using voom() on TPM (or RPKM) values. I have TPM values on gene level for 200 samples, and I want to use voom() function to log-normalize... -
FPKMs and Limma R package
Hi!
I have generated a dataset with 9 different biological samples (plus replicates) and have analyzed it using TopHat and CuffLinks. Therefore,...
