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Validating and Evaluating the Quality of an NGS pipeline
Hello all, I'm a novice bioinformatician and have developed a NGS analysis pipeline majorly for SNP calling. I would like to evaluate the accuracy of...Last edited by Nilaksha; 03-12-2014, 02:10 AM.
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Simulating reads with WGSim
Hello all, I'm new to SeqAnswers and I'm excited to contribute to the community. That being said, I was wondering if anyone has some tips for me. My goal...
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wgsim_eval output clarification
I am an undergraduate student just starting in bioinformatics and my boss has asked me to use wgsim to get a better sense the differences between bowtie2...
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Generating mutations with WGSim
I've just started using WGSim, and I'm trying to mutate the data a specified amount (eg: 300 bp using only simple point mutations) of an entire genome,...
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Pipeline to simulate short reads and call indels
Hi
http://biotechies.blogspot.com/2011/...ct-indels.html is a kind of howto for doing the following pipeline:...
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mutation report from wgsim is wierd.
Hi,
This is snapshot of wgsim result.
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X 83495 C S +...