Hi,I have a problem about running soapfusion.
After running soapfusion short(Alignment).I have alreay got result.out and result.2Seqs.
But when I ran perl soapfusion.pl(fusion discovery),I don't understand what is the annotation file (.psl) in description of maual.
I have use NMToTreefam.txt for <ref_Gene.psl> and refGeneTrRegionFinal for <ref_Gene_exon_region.psl>.However,It can't output the result.
It is because I ran incorrect annotation file in step of fusion discovery?
After running soapfusion short(Alignment).I have alreay got result.out and result.2Seqs.
But when I ran perl soapfusion.pl(fusion discovery),I don't understand what is the annotation file (.psl) in description of maual.
I have use NMToTreefam.txt for <ref_Gene.psl> and refGeneTrRegionFinal for <ref_Gene_exon_region.psl>.However,It can't output the result.
It is because I ran incorrect annotation file in step of fusion discovery?