Can you see the error in here?
Thanks in advance
java -Xmx4G -jar /GenoStorage/Software/snpEff_2_0_5d/snpEff.jar eff -v -onlyCoding true -i vcf -o txt /GenoStorage/BasesDados/GRCh37.64 varSample02187ATESTE.flt.vcf > snpEff_sample02187A.vcf
00:00:00.000 Reading configuration file 'snpEff.config'
java.lang.RuntimeException: Cannot find config file 'snpEff.config'
at ca.mcgill.mcb.pcingola.snpEffect.Config.read(Config.java:117)
at ca.mcgill.mcb.pcingola.snpEffect.Config.<init>(Config.java:46)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEffCmdEff.run(SnpEffCmdEff.java:523)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.run(SnpEff.java:244)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.main(SnpEff.java:72)
00:00:00.007 Finishing up
Thanks in advance
java -Xmx4G -jar /GenoStorage/Software/snpEff_2_0_5d/snpEff.jar eff -v -onlyCoding true -i vcf -o txt /GenoStorage/BasesDados/GRCh37.64 varSample02187ATESTE.flt.vcf > snpEff_sample02187A.vcf
00:00:00.000 Reading configuration file 'snpEff.config'
java.lang.RuntimeException: Cannot find config file 'snpEff.config'
at ca.mcgill.mcb.pcingola.snpEffect.Config.read(Config.java:117)
at ca.mcgill.mcb.pcingola.snpEffect.Config.<init>(Config.java:46)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEffCmdEff.run(SnpEffCmdEff.java:523)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.run(SnpEff.java:244)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.main(SnpEff.java:72)
00:00:00.007 Finishing up
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