I am using stampy to map Illumina reads to a reference genome.
I started with a test run, using stampy's -T option. Everything went well, but I am having a hard time interpreting the output.
Is there any proper documentation to understand the results of the test run in stampy? Unfortunately, the readme does not offer much insight.
I started with a test run, using stampy's -T option. Everything went well, but I am having a hard time interpreting the output.
Is there any proper documentation to understand the results of the test run in stampy? Unfortunately, the readme does not offer much insight.
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