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  • Comparison of Tissue specific expression (Rna-seq)

    Hi

    I'm wondering if exist a easy method to identify Tissue specific expression using the result of RNA-seq approach, i have 4 condition and i want to compare one to another.

    What program could help me in this work?

    By the way i used to use "Amoscmp" for this task, i mapping Lib1 vs Consensus Transcriptome (lib1+lib2+lib3+lib4) and see how many reads lib1 has in the consensus transcriptome and see condition especific expression but the results are unclear.

    note: Not reference genome exists.

    Thanks
    Daniel
    Last edited by detq182; 05-20-2012, 10:22 AM.

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