Hi,
I am getting variants of 3 different alleles/indels and I wish to know the order of the genotypes likelihoods (PL).
SL2.40ch00 10656127 . N C,T,G 75 . DP=56;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,56,0;MQ=24;FQ=-160 GT:PL:GQ 1/1:116,141,8,79,0,49,118,113,63,112:99
Thank you,
Karen
I am getting variants of 3 different alleles/indels and I wish to know the order of the genotypes likelihoods (PL).
SL2.40ch00 10656127 . N C,T,G 75 . DP=56;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,56,0;MQ=24;FQ=-160 GT:PL:GQ 1/1:116,141,8,79,0,49,118,113,63,112:99
Thank you,
Karen