Hello, everybody, I recently encountered some problems about GATK .the vision i used is v1.4-30.
as we all know,there are four format about the quality:Low_quality,PASS,TruthSensitivityTranche99.00to99.90 and TruthSensitivityTranche99.90to100.00.
actually,I dont know how to defined the distinguish for some SNP with very high quality but still labeled TruthSensitivityTranche99.90to100.00?can anyone help me to explanat this ?
best regard!!
as we all know,there are four format about the quality:Low_quality,PASS,TruthSensitivityTranche99.00to99.90 and TruthSensitivityTranche99.90to100.00.
actually,I dont know how to defined the distinguish for some SNP with very high quality but still labeled TruthSensitivityTranche99.90to100.00?can anyone help me to explanat this ?
best regard!!