Hello SEQanswers,
We're going to be de novo assembling a genome of an organism with a genome size between 20-50MB. We're looking for recommendations on what types (454, Illumina SIPES, Illumina LIPES, or others) and any combinations of sequencing platforms/libraries are currently producing the best results for de novo assembly.
We are also looking for a recommended minimum read depth/count for producing a high quality draft genome.
If this is talked about in a separate thread please direct me to it.
Thanks,
Phil
We're going to be de novo assembling a genome of an organism with a genome size between 20-50MB. We're looking for recommendations on what types (454, Illumina SIPES, Illumina LIPES, or others) and any combinations of sequencing platforms/libraries are currently producing the best results for de novo assembly.
We are also looking for a recommended minimum read depth/count for producing a high quality draft genome.
If this is talked about in a separate thread please direct me to it.
Thanks,
Phil
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