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  • Cmake (ensure_out_of_source_build) error

    Currently I would like to install bamtools.
    However, I keep on facing the following bug message:
    CMake Error at CMakeLists.txt:20 (message):


    BamTools requires an out of source build.
    $ mkdir build
    $ cd build
    $ cmake ..
    $ make

    (or the Windows equivalent)

    Call Stack (most recent call first):
    CMakeLists.txt:24 (ensure_out_of_source_build)


    -- Configuring incomplete, errors occurred!

    Anyone got advice to solve this bug?
    I have follow the step by step as shown in bamtools installation manual and the following link,
    C++ API & command-line toolkit for working with BAM data - pezmaster31/bamtools

    The patch allows to create a working out-of-source build tree: git clone https://github.com/domibel/bamtools.git mkdir bamtools-build cd bamtools-build cmake ../bamtools make The source tree bamtoo...


    Thanks.

  • #2
    Where are you creating the build folder? The out-of-source build constraint means you aren't allowed to build the executable in your source directory (so that you don't clutter up the source tree).

    I just tried the following steps, and it seemed to work fine on my Mac.

    Code:
    git clone https://github.com/domibel/bamtools.git
    mkdir bamtools-build
    cd bamtools-build
    cmake ../bamtools
    make
    The bamtools-build directory is at the same level as the bamtools directory. The bamtools executable will be in bamtools-build/bin

    Justin

    Comment


    • #3
      Thanks BAMseek.

      You are right.
      You solved my problem instead

      Many thanks.

      Comment

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