Hi
Are there any variant calling programs that retain read id info and provide it in the output? I use samtools and it seems to only provide the number of reads supporting/not supporting a particular SNP. I am interested to know which reads have or do not have the SNP at any given SNP loci.
I would really appreciate any help.
Thanks
Are there any variant calling programs that retain read id info and provide it in the output? I use samtools and it seems to only provide the number of reads supporting/not supporting a particular SNP. I am interested to know which reads have or do not have the SNP at any given SNP loci.
I would really appreciate any help.
Thanks