Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • zcrself
    Junior Member
    • Sep 2009
    • 5

    #1

    EBI gene annotation submit

    Using fgensh, I get the annotation as follows:
    Code:
     Positions of predicted genes and exons: Variant   1 from   1, Score:1017.988379 
       G Str   Feature   Start        End    Score           ORF           Len
    
       1 +    1 CDSi       672 -       821   10.03       673 -       819    147
       1 +    2 CDSi       911 -      1040   12.36       912 -      1040    129
       1 +    3 CDSi      1150 -      1809   34.39      1150 -      1809    660
       1 +    4 CDSi      1903 -      2001    6.55      1903 -      2001     99
       1 +    5 CDSi      2080 -      2232   11.66      2080 -      2232    153
       1 +    6 CDSi      2345 -      3076   71.31      2345 -      3076    732
       1 +    7 CDSl      3360 -      3662   26.92      3360 -      3662    303
       1 +      PolA      3841               -1.06
    After format:
    Code:
    FT   gene            672..3662
    FT                   /gene="ORW1943Ba0047B01.1"
    FT   CDS             join(673..821,911..1040,1150..1809,1903..2001,2080..2232,
    FT                   2345..3076,3360..3662)
    FT                   /gene="ORW1943Ba0047B01.1"
    FT                   /codon_start=1
    FT                   /translation="NLINILAEISQSGKQRHVPYRDSKLTFLLQESLGGNAKLAMIC
    FT                   AVSPSQSCKSETLSTLRFAQRAKSIKNNAVVNEQKEEDVNMLREQIRQLKDELHRMK
    FT                   SGGSDGSNGSFSTGWNARRSLHLLKMSLSRPTTFQTIHEDSGDVEMEIDENDVEKPY
    FT                   NQDNMVISPPGDKECKELQASLKINGGTSLDVFDGENLMPTKRSCSDDRYKLNLAAS
    FT                   IQRGLQVIENHQNNGAWRRASVGFNARIVDVQPCKVDVAIQTEPEESEARDNPLALI
    FT                   SSHVLGTSATVSNDPNACRDLQLVQYDAGITRDEPKQQQILKAVEKVLAGAIRREMA
    FT                   RDEQCVKQAAEIQQLNRLVQQYKHERECNAVIAQTREGKIARLESLMDGTLPTEEFI
    FT                   NEEYLSLMNEHKILQQKYENHPELLRAEIELKRLQEELELCRNYIDEKEVLQEEIQD
    FT                   LKSHLHFMLSSSASIRRLWPPVQLSHGVGPSPVTNDADGDNNAVDTPDWAEAESKWV
    FT                   TLTEELRVELEANKSLVGRLRSELESEKKCSEEVKEALQTAMQGHARILEQYAELEE
    FT                   RHIGLLAMHRKIREGVEDVKARAAKAGVKGAELRFINSLAAEMAVLRAENKGLQDQL
    FT                   GDTAEAVQAAGELLVRLKEAEEAEALAQRRALLAEQETEKAYQEIDNLKKNYDQEIV
    FT                   ALNQRLSESSHHQETTLAIEACDMETTKYDTAGSPGDQQWREEFNQQGGSFEVSKST
    FT                   DLNSWFSGYDKCNI"
    After submitted:
    error log as follows:
    Code:
    ERROR: CDS
    join(673..821,911..1040,1150..1809,1903..2001,2080..2232,2345..3076,3360..36
    62)
    ERROR: invalid start codon aat - consider 5' partial location:

Latest Articles

Collapse

  • SEQadmin2
    How Immunogenomics Decodes Immunity’s Genetic Blueprint
    by SEQadmin2




    The immune system’s power comes from its genetic diversity, allowing myriad threats to be neutralized through first recognizing foreign antigens. That diversity is also what makes the immune system so difficult to study. Recent advances in sequencing technology and computational biology, however, are giving researchers new tools to understand immune responses and immune-related diseases in greater detail.

    This convergence of genetics, immunology, and computation...
    Today, 05:41 AM
  • SEQadmin2
    Beyond CRISPR/Cas9: Understand, Choose, and Use the Right Genome Editing Tool
    by SEQadmin2



    CRISPR/Cas9 sparked the gene editing revolution for both research and therapeutics.1 But this system still showed severe issues that limited its applications. The most prominent were the heavy reliance on PAM sequences, delivery limitations, double-stranded breaks that prompt unintended edits and cell death, and editing inefficiency (both in targeting and in knock-in reliability).

    Despite this, “CRISPR helped turn genome editing from a specialized technique into
    ...
    07-31-2026, 11:01 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by SEQadmin2, 08-24-2026, 10:32 AM
0 responses
42 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 08-20-2026, 11:17 AM
0 responses
48 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 08-18-2026, 10:05 AM
0 responses
54 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 08-13-2026, 12:22 PM
0 responses
50 views
0 reactions
Last Post SEQadmin2  
Working...