Using fgensh, I get the annotation as follows:
After format:
After submitted:
error log as follows:
Code:
Positions of predicted genes and exons: Variant 1 from 1, Score:1017.988379 G Str Feature Start End Score ORF Len 1 + 1 CDSi 672 - 821 10.03 673 - 819 147 1 + 2 CDSi 911 - 1040 12.36 912 - 1040 129 1 + 3 CDSi 1150 - 1809 34.39 1150 - 1809 660 1 + 4 CDSi 1903 - 2001 6.55 1903 - 2001 99 1 + 5 CDSi 2080 - 2232 11.66 2080 - 2232 153 1 + 6 CDSi 2345 - 3076 71.31 2345 - 3076 732 1 + 7 CDSl 3360 - 3662 26.92 3360 - 3662 303 1 + PolA 3841 -1.06
Code:
FT gene 672..3662 FT /gene="ORW1943Ba0047B01.1" FT CDS join(673..821,911..1040,1150..1809,1903..2001,2080..2232, FT 2345..3076,3360..3662) FT /gene="ORW1943Ba0047B01.1" FT /codon_start=1 FT /translation="NLINILAEISQSGKQRHVPYRDSKLTFLLQESLGGNAKLAMIC FT AVSPSQSCKSETLSTLRFAQRAKSIKNNAVVNEQKEEDVNMLREQIRQLKDELHRMK FT SGGSDGSNGSFSTGWNARRSLHLLKMSLSRPTTFQTIHEDSGDVEMEIDENDVEKPY FT NQDNMVISPPGDKECKELQASLKINGGTSLDVFDGENLMPTKRSCSDDRYKLNLAAS FT IQRGLQVIENHQNNGAWRRASVGFNARIVDVQPCKVDVAIQTEPEESEARDNPLALI FT SSHVLGTSATVSNDPNACRDLQLVQYDAGITRDEPKQQQILKAVEKVLAGAIRREMA FT RDEQCVKQAAEIQQLNRLVQQYKHERECNAVIAQTREGKIARLESLMDGTLPTEEFI FT NEEYLSLMNEHKILQQKYENHPELLRAEIELKRLQEELELCRNYIDEKEVLQEEIQD FT LKSHLHFMLSSSASIRRLWPPVQLSHGVGPSPVTNDADGDNNAVDTPDWAEAESKWV FT TLTEELRVELEANKSLVGRLRSELESEKKCSEEVKEALQTAMQGHARILEQYAELEE FT RHIGLLAMHRKIREGVEDVKARAAKAGVKGAELRFINSLAAEMAVLRAENKGLQDQL FT GDTAEAVQAAGELLVRLKEAEEAEALAQRRALLAEQETEKAYQEIDNLKKNYDQEIV FT ALNQRLSESSHHQETTLAIEACDMETTKYDTAGSPGDQQWREEFNQQGGSFEVSKST FT DLNSWFSGYDKCNI"
error log as follows:
Code:
ERROR: CDS join(673..821,911..1040,1150..1809,1903..2001,2080..2232,2345..3076,3360..36 62) ERROR: invalid start codon aat - consider 5' partial location: