Hi everyone,
I'd like to convert gtf file to fasta file by gffread. However, the output gave me the header in transcript_id, like ">TCONS_00000568 gene=XLOC_000524". Is there anyway I could ask gffread to read the "gene_id" column, instead of "transcript_id" column? Or could anyone share other methods?
Thank you very much
I'd like to convert gtf file to fasta file by gffread. However, the output gave me the header in transcript_id, like ">TCONS_00000568 gene=XLOC_000524". Is there anyway I could ask gffread to read the "gene_id" column, instead of "transcript_id" column? Or could anyone share other methods?
Thank you very much