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  • #61
    bedToBam

    dnascopev@ubuntu:~/samtools-0.1.19$ make
    make[1]: Entering directory `/home/dnascopev/samtools-0.1.19'
    make[2]: Entering directory `/home/dnascopev/samtools-0.1.19'
    make[2]: Nothing to be done for `lib'.
    make[2]: Leaving directory `/home/dnascopev/samtools-0.1.19'
    make[2]: Entering directory `/home/dnascopev/samtools-0.1.19/bcftools'
    make[2]: Nothing to be done for `lib'.
    make[2]: Leaving directory `/home/dnascopev/samtools-0.1.19/bcftools'
    make[2]: Entering directory `/home/dnascopev/samtools-0.1.19/misc'
    make[2]: Nothing to be done for `lib'.
    make[2]: Leaving directory `/home/dnascopev/samtools-0.1.19/misc'
    gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_tview_curses.c -o bam_tview_curses.o
    bam_tview_curses.c:5:20: fatal error: curses.h: No such file or directory
    compilation terminated.
    make[1]: *** [bam_tview_curses.o] Error 1
    make[1]: Leaving directory `/home/dnascopev/samtools-0.1.19'
    make: *** [all-recur] Error 1

    seems that a GNU ncurses library didnt install:
    I tried-
    $ wget http://ftp.gnu.org/pub/gnu/ncurses/ncurses-5.7.tar.gz
    $ tar xzf ncurses-5.7.tar.gz
    $ cd ncurses-5.7
    $ ./configure --prefix=/opt/ncurses
    $ make
    # make install
    $ ls -la /opt/ncurses

    and got no opt/ncurses
    dnascopev@ubuntu:~/ncurses-5.7$ ls -lt
    total 1621
    drwxr-xr-x 2 dnascopev dnascopev 1024 Jul 13 08:22 c++
    drwxrwxr-x 2 dnascopev dnascopev 1024 Jul 13 08:22 lib
    drwxrwxr-x 2 dnascopev dnascopev 9216 Jul 13 08:22 objects
    drwxr-xr-x 3 dnascopev dnascopev 1024 Jul 13 08:22 misc
    drwxr-xr-x 2 dnascopev dnascopev 5120 Jul 13 08:22 test
    drwxrwxr-x 2 dnascopev dnascopev 9216 Jul 13 08:21 obj_g
    drwxr-xr-x 2 dnascopev dnascopev 1024 Jul 13 08:21 include
    drwxr-xr-x 2 dnascopev dnascopev 1024 Jul 13 08:20 progs
    drwxr-xr-x 7 dnascopev dnascopev 1024 Jul 13 08:20 ncurses
    drwxr-xr-x 2 dnascopev dnascopev 5120 Jul 13 08:20 man
    -rw-rw-r-- 1 dnascopev dnascopev 61167 Jul 13 08:20 config.log
    -rwxrwxr-x 1 dnascopev dnascopev 40288 Jul 13 08:20 config.status
    drwxr-xr-x 2 dnascopev dnascopev 1024 Jul 13 08:20 form
    -rwxr-xr-x 1 dnascopev dnascopev 901 Jul 13 08:20 headers.sh
    -rw-rw-r-- 1 dnascopev dnascopev 5723 Jul 13 08:20 Makefile
    drwxr-xr-x 2 dnascopev dnascopev 1024 Jul 13 08:20 menu
    drwxr-xr-x 2 dnascopev dnascopev 1024 Jul 13 08:20 panel
    -rw-rw-r-- 1 dnascopev dnascopev 19692 Jul 13 08:20 edit_man.sed
    -rwxr-xr-x 1 dnascopev dnascopev 4286 Jul 13 08:20 edit_man.sh
    drwxr-xr-x 5 dnascopev dnascopev 1024 Nov 2 2008 Ada95
    drwxr-xr-x 3 dnascopev dnascopev 1024 Nov 2 2008 doc
    -r--r--r-- 1 dnascopev dnascopev 71037 Nov 2 2008 INSTALL
    -r--r--r-- 1 dnascopev dnascopev 22626 Nov 1 2008 ANNOUNCE
    -r--r--r-- 1 dnascopev dnascopev 23685 Nov 1 2008 announce.html.in
    -r--r--r-- 1 dnascopev dnascopev 7195 Nov 1 2008 dist.mk
    -r--r--r-- 1 dnascopev dnascopev 416617 Nov 1 2008 NEWS
    -r-xr-xr-x 1 dnascopev dnascopev 500689 Oct 25 2008 configure
    -r--r--r-- 1 dnascopev dnascopev 31442 Oct 25 2008 MANIFEST
    -r--r--r-- 1 dnascopev dnascopev 163659 Oct 25 2008 aclocal.m4
    -r--r--r-- 1 dnascopev dnascopev 55669 Oct 18 2008 configure.in
    -r--r--r-- 1 dnascopev dnascopev 9619 Oct 11 2008 TO-DO
    -r-xr-xr-x 1 dnascopev dnascopev 44914 Aug 30 2008 config.guess
    -r-xr-xr-x 1 dnascopev dnascopev 33704 Aug 30 2008 config.sub
    -r--r--r-- 1 dnascopev dnascopev 4019 Mar 31 2007 mk-hdr.awk
    -r-xr-xr-x 1 dnascopev dnascopev 1320 Mar 25 2007 mkdirs.sh
    -r--r--r-- 1 dnascopev dnascopev 15813 Mar 24 2007 mk-1st.awk
    -r--r--r-- 1 dnascopev dnascopev 2529 Oct 28 2006 AUTHORS
    -r--r--r-- 1 dnascopev dnascopev 4881 Apr 22 2006 convert_configure.pl
    -r--r--r-- 1 dnascopev dnascopev 9870 Apr 22 2006 README
    -r--r--r-- 1 dnascopev dnascopev 3985 Apr 22 2006 README.emx
    -r--r--r-- 1 dnascopev dnascopev 8749 Apr 22 2006 Makefile.os2
    -r--r--r-- 1 dnascopev dnascopev 3901 Jan 29 2005 Makefile.in
    -r--r--r-- 1 dnascopev dnascopev 4189 Jan 22 2005 mk-0th.awk
    -r--r--r-- 1 dnascopev dnascopev 5285 Jan 22 2005 mk-2nd.awk
    -r-xr-xr-x 1 dnascopev dnascopev 7123 Nov 29 2003 install-sh
    -r-xr-xr-x 1 dnascopev dnascopev 3038 Oct 25 2003 tar-copy.sh
    Thank you.

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