[boetsie]

Only thing I know is that the last column is referenced to the file 'organism_map'. In this case;

382680 uncultured bacterium 77133

The number 77133 is a taxonomy number, which you can search at the NCBI site:

http://www.ncbi.nlm.nih.gov/taxonomy/?term=77133

Boetsie

[Bachbioinfo]

Thanks,

I do not find the informations about annotations in md5 files ... in md5_map_rna, md5_map, md5_protein_map .... it is no trivial to guess what does it mean each column.

Do LSU/SSU among md5 source options represent SILVA informations sources ?

a last question is what is the word_size that you have been choose in blastn

Thanks

Only thing I know is that the last column is referenced to the file 'organism_map'. In this case;

382680 uncultured bacterium 77133

The number 77133 is a taxonomy number, which you can search at the NCBI site:

http://www.ncbi.nlm.nih.gov/taxonomy/?term=77133

Boetsie

[rhinoceros]

md5_map_rna, md5_map, md5_protein_map .... it is no trivial to guess what does it mean each column.

I agree, but don't you agree that the best way to find out would be to ask from the guys who made it..

[Bachbioinfo]

I agree, but don't you agree that the best way to find out would be to ask from the guys who made it..

Hello,

I full agree rhinoceros, and thanks for this idea. I have just ask them the question, is the best way to understand their data. I will post their answer once I have their answer

Thanks