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  • download data from pfam

    Dear Forum members,
    I want to download the sequences or accession id from PFAM 7tm_1 for C. elegans.

    Please help me how do proceed with this?
    Bioinformaticscally calm

  • #2
    Try UniProt



    or BioMart.

    Comment


    • #3
      "7tm_1" Page: http://pfam.xfam.org/family/7tm_1

      Click on "species" on the left. Find the C. elegans in the sunburst. Attaching an image to point to the area where you will find C. elegans (2 o'clock).

      Once you select C. elegans, you can generate a file with fasta sequences by using the link in the "sunburst controls" panel (191 sequences).
      Attached Files

      Comment


      • #4
        @Genomax: Wow. That is helpful. Thank you.
        I got the organism. It shows 191 sequences, correctly.
        When I click on generate Fasta file, it loads and further there is no activity.
        Am I doing something wrong?
        Last edited by bio_informatics; 05-09-2014, 06:50 PM.
        Bioinformaticscally calm

        Comment


        • #5
          Originally posted by bio_informatics View Post
          When I click on generate Fasta file, it loads and further there is no activity.
          Am I doing something wrong?
          You may need to allow pop-ups from the PFAM site, if you are using a blocker. I was able to download the file without any problems once I did that.

          Comment


          • #6
            Originally posted by GenoMax View Post
            You may need to allow pop-ups from the PFAM site, if you are using a blocker. I was able to download the file without any problems once I did that.
            some issue with Mozilla. Got it done with Chrome.

            Thank you once again.
            Bioinformaticscally calm

            Comment

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