Hello,
I am worried to see different values of FPKM for the same gene in the Cufflinks genes.fpkm_tracking vs isoforms.fpkm_tracking files.
I was under the impression that one could use the genes.fpkm file if we are not worried about the isoform information. Am I wrong?
Please see example below:
login3$ grep Nox1 genes.fpkm_tracking
ENSMUSG00000031257.8 - - ENSMUSG00000031257.8 Nox1 - chrX:134086420-134221956 - - 2.56323 2.26375 2.71812 OK
login3$ grep Nox1 isoforms.fpkm_tracking |grep -v ENSMUST
ENSMUSG00000031257.8 - - ENSMUSG00000031257.8 Nox1 - chrX:134086420-134221956 135536 0.0626628 0.00383565 0.00300087 0.00468318 OK
Could someone (especially developers) please comment?
Thanks,
Manoj.
I am worried to see different values of FPKM for the same gene in the Cufflinks genes.fpkm_tracking vs isoforms.fpkm_tracking files.
I was under the impression that one could use the genes.fpkm file if we are not worried about the isoform information. Am I wrong?
Please see example below:
login3$ grep Nox1 genes.fpkm_tracking
ENSMUSG00000031257.8 - - ENSMUSG00000031257.8 Nox1 - chrX:134086420-134221956 - - 2.56323 2.26375 2.71812 OK
login3$ grep Nox1 isoforms.fpkm_tracking |grep -v ENSMUST
ENSMUSG00000031257.8 - - ENSMUSG00000031257.8 Nox1 - chrX:134086420-134221956 135536 0.0626628 0.00383565 0.00300087 0.00468318 OK
Could someone (especially developers) please comment?
Thanks,
Manoj.