I read several posting related with cnv-seq output.. but still have some questions. (http://seqanswers.com/forums/showthread.php?t=16882)
When I got the result from cnv-seq, I have th following result. As you can see I have several lines which have significant pvalue but no cnv number or no cnv.pvalue. and in the same way, several lines wiich have significant pvalue with cnv number and cnv.pvalue. what is those difference?
Pvalue itself is not trustful? Do I just have to see the cnv.pvalue??
Please help with this!
When I got the result from cnv-seq, I have th following result. As you can see I have several lines which have significant pvalue but no cnv number or no cnv.pvalue. and in the same way, several lines wiich have significant pvalue with cnv number and cnv.pvalue. what is those difference?
Pvalue itself is not trustful? Do I just have to see the cnv.pvalue??
Please help with this!
"chr5" 180663341 180701730 6 18 180682536 -1.58349117526084 9.82299240634492e-17 0 NA NA NA
"chr5" 180682536 180720925 11 43 180701730 -1.96536181060448 3.39684019358135e-21 0 NA NA NA
"chr5" 180701731 180740120 47 62 180720926 -0.398136133248921 0.00620936069953809 0 NA NA NA
"chr5" 180720926 180759315 713 591 180740120 0.272215271726673 0.0423800701757286 0 NA NA NA
"chr5" 180740121 180778510 712 597 180759316 0.255617635161909 0.0526152496438912 0 NA NA NA
"chr5" 180759316 180797705 53 83 180778510 -0.645647651323409 3.81296507663028e-05 4144 115171 -0.991771308364374 1.70335694939537e-45
"chr5" 180778511 180816900 37 81 180797706 -1.12892531179536 6.69646184005223e-11 4144 115171 -0.991771308364374 1.70335694939537e-45
"chr5" 180797706 180836095 38 69 180816900 -0.859125617874267 1.58258808831096e-07 4144 115171 -0.991771308364374 1.70335694939537e-45
"chr5" 180816901 180855290 33 52 180836096 -0.654574273322322 3.0846549913038e-05 4144 115171 -0.991771308364374 1.70335694939537e-45
"chr5" 180836096 180874485 23 70 180855290 -1.60424973542764 5.43648246376174e-17 4144 115171 -0.991771308364374 1.70335694939537e-45
"chr5" 180855291 180893680 30 71 180874486 -1.24138519843585 2.33599758743762e-12 4144 115171 -0.991771308364374 1.70335694939537e-45
"chr5" 180874486 180912875 33 35 180893680 -0.0834175721261962 0.297461789422106 0 NA NA NA
"chr5" 180893681 180932070 12 12 180912876 0.00147132546031685 0.49625594430728 0 NA NA NA
"chr5" 180682536 180720925 11 43 180701730 -1.96536181060448 3.39684019358135e-21 0 NA NA NA
"chr5" 180701731 180740120 47 62 180720926 -0.398136133248921 0.00620936069953809 0 NA NA NA
"chr5" 180720926 180759315 713 591 180740120 0.272215271726673 0.0423800701757286 0 NA NA NA
"chr5" 180740121 180778510 712 597 180759316 0.255617635161909 0.0526152496438912 0 NA NA NA
"chr5" 180759316 180797705 53 83 180778510 -0.645647651323409 3.81296507663028e-05 4144 115171 -0.991771308364374 1.70335694939537e-45
"chr5" 180778511 180816900 37 81 180797706 -1.12892531179536 6.69646184005223e-11 4144 115171 -0.991771308364374 1.70335694939537e-45
"chr5" 180797706 180836095 38 69 180816900 -0.859125617874267 1.58258808831096e-07 4144 115171 -0.991771308364374 1.70335694939537e-45
"chr5" 180816901 180855290 33 52 180836096 -0.654574273322322 3.0846549913038e-05 4144 115171 -0.991771308364374 1.70335694939537e-45
"chr5" 180836096 180874485 23 70 180855290 -1.60424973542764 5.43648246376174e-17 4144 115171 -0.991771308364374 1.70335694939537e-45
"chr5" 180855291 180893680 30 71 180874486 -1.24138519843585 2.33599758743762e-12 4144 115171 -0.991771308364374 1.70335694939537e-45
"chr5" 180874486 180912875 33 35 180893680 -0.0834175721261962 0.297461789422106 0 NA NA NA
"chr5" 180893681 180932070 12 12 180912876 0.00147132546031685 0.49625594430728 0 NA NA NA
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