i want all the genes e.g in sample 1 to be concatenated as >1 likewise for my all samples
my thought is as all genes in all files are in same order so when i have multifasta as >1, >2, >3,>4,>5
i will take that multifasta to do alignment around these interval
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If you rename all of them as >1 or >2 for a sample the sequences ID's would no longer be unique.
What kind of MSA are you trying to do?
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Originally posted by GenoMax View PostYou want to convert every fasta ID header from multiple fasta sequences in file "a" to >1 and from file "b" to >2, is that correct?
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You want to convert every fasta ID header from multiple fasta sequences in file "a" to >1 and from file "b" to >2, is that correct?
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Do you want to know how to do the renaming or is this just an informational post?
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MUltifasta file
hi every one,
what i need to do is i need multiple sequence alignment file
i converted the vcf file to consensus fasta and "cat" all these consensus sequence into multifasta.
in my cat file seq are >1......>10000 for a.fasta and >1......>10000 for b.fasta when i use clustal w it gives error that sequence have same header THAT MAKES SENSE so what i am planning to do is to convert >1..>2...>3.>10000 to >1
and >1..>2..>3..>10000 for b.fasta to >2 and same for for all my 5 samples
i have to use this file for multiple alignment
RegardsLast edited by huma Asif; 09-08-2014, 10:13 AM.Tags: None
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