Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • tassel 5 for GBS data

    Hi, everyone,

    I just started using tassel for GBS data. I downloaded tassel 5 on my PC (4 core Intel i7 destop with 8GB of RAM running Windows 7), but every time I tried to load some GBS data, such as topm file, there is hardly any response of tassel. My data can be loaded, but by clicking any data, it would say "tassel has experienced an error". I am thinking this is because of my computer's computation power, but anyone here has encountered the similar problem before? Is it possible to run any analysis on tassel with this limited computation power?

    Thanks!

  • #2
    The published TASSEL needed 8-16GB to run the core functions. It may have increased with newer versions. Have you tried the test data? Is your Java up to date?
    Providing nextRAD genotyping and PacBio sequencing services. http://snpsaurus.com

    Comment


    • #3
      I have the most up-to-date Java 8, and tassel works well with test data. So I am wondering it may because my data size is too large. I have four raw fastq data zipped file, with each takes up over 10 GB. I was told to increase heap, I will try that option.

      Comment


      • #4
        Just wondering if you had any success after increasing the heap size?

        Comment


        • #5
          Tassels runs well after you increase the heap size, but make sure you have administrator authority on your computer to set up the environment to run tassel.

          Comment

          Latest Articles

          Collapse

          • seqadmin
            The Impact of AI in Genomic Medicine
            by seqadmin



            Artificial intelligence (AI) has evolved from a futuristic vision to a mainstream technology, highlighted by the introduction of tools like OpenAI's ChatGPT and Google's Gemini. In recent years, AI has become increasingly integrated into the field of genomics. This integration has enabled new scientific discoveries while simultaneously raising important ethical questions1. Interviews with two researchers at the center of this intersection provide insightful perspectives into...
            02-26-2024, 02:07 PM
          • seqadmin
            Multiomics Techniques Advancing Disease Research
            by seqadmin


            New and advanced multiomics tools and technologies have opened new avenues of research and markedly enhanced various disciplines such as disease research and precision medicine1. The practice of merging diverse data from various ‘omes increasingly provides a more holistic understanding of biological systems. As Maddison Masaeli, Co-Founder and CEO at Deepcell, aptly noted, “You can't explain biology in its complex form with one modality.”

            A major leap in the field has
            ...
            02-08-2024, 06:33 AM

          ad_right_rmr

          Collapse

          News

          Collapse

          Topics Statistics Last Post
          Started by seqadmin, Yesterday, 06:12 AM
          0 responses
          20 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 02-23-2024, 04:11 PM
          0 responses
          67 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 02-21-2024, 08:52 AM
          0 responses
          75 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 02-20-2024, 08:57 AM
          0 responses
          67 views
          0 likes
          Last Post seqadmin  
          Working...
          X