Hi all,
I'm working with Rat RNA-Seq data and I have problems annotating new transcripts that are present in my reads. I've run cuffcompare (Cuffcompare v2.2.1) with the following command:
cuffcompare -r Rattus_norvegicus.Rnor_5.0.79.gtf SC_transcripts.gtf
But it hasn't output neither <cuff_in>.refmap nor <cuff_in>.tmap.
Does anyone know why? or what can i do to solve the problem?
Thank you in advance for reading and for your help,
Miriam
I'm working with Rat RNA-Seq data and I have problems annotating new transcripts that are present in my reads. I've run cuffcompare (Cuffcompare v2.2.1) with the following command:
cuffcompare -r Rattus_norvegicus.Rnor_5.0.79.gtf SC_transcripts.gtf
But it hasn't output neither <cuff_in>.refmap nor <cuff_in>.tmap.
Does anyone know why? or what can i do to solve the problem?
Thank you in advance for reading and for your help,
Miriam