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  • BitMapper: an efficient all-mapper based on bit-vector computing

    Hello everyone,

    We have designed and implemented a novel read mapper named Bitmapper. It is used to find all mapping locations of each read. The main features are listed as follows.

    1. It is several times faster than the current state-of-the-art all-mappers.

    2. The sensitivity of it is usually higher than most of the all-mappers.

    3. The allowed edit distance threshold of it is up to 15.

    4. It supports both single-thread mode and multi-thread mode.

    If you are interested to it, please download it from
    http://home.ustc.edu.cn/~chhy/.

    And the link of the paper is http://www.biomedcentral.com/1471-2105/16/192 .

    Any feedback are welcome!

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