Originally posted by vivek_
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That error is very logical if you want the tool to work on bed files. You could flip the coordinates and add a 4th column indicating +/- in the BED file to preserve orientation for such cases before using BEDtools.
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bedtools giving me an error, new program suggestions?
Hi all
Recently I started using bedtools as a way of analyzing a genome, it was working fantastically. But I ran into an error which is making me look into other methods of analyzing a genome (other than writing my own script, but alas it might come down to that )
The error I encounter is the following
Start was greater than end.
My question is there a program that would take and not give me an error. Or do I have to come to my own and write my own script ?
Cheers
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