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  • Making local Database

    Hello,

    I am making my own database out of fasta files and need help on how to re-format my command line when creating these databases.

    makeblastdb -in test.fasta -dbtype nucl -parse_seqids -out testDB

    The file type outputs that I receive currently when I run it is :
    testDB.nhr
    testDB.nin
    testDB.nog
    testDB.nsd
    testDB.nsi
    testDB.nsq

    What I need is a .nal file to run blast from the error I am receiving. Now do I get a .nal file when I combine multiple databases? I have run blast on a few files and have a couple of folders with all of them organized into it.
    How do I combine databases to get one large one with a _____.nal file type?

  • #2
    Use the blastdb_aliastool. Help available at this page.

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    • #3
      This is (almost) a duplicate of your other thread, where you have been given some help: http://seqanswers.com/forums/showthread.php?t=72083
      Last edited by maubp; 10-26-2016, 07:05 AM. Reason: clarify

      Comment


      • #4
        Sounds like here the question is about combining two (or more) separate databases into one alias (if that is what @rvgill meant to ask).

        Comment


        • #5
          In which case its a near duplicate of @rvgill's third thread http://seqanswers.com/forums/showthread.php?t=72192

          Comment

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