Hello all,
I am having an issue with importing my information(6 .txt files) within the directory using Linux and R. The pipeline that I am using is TopHat-HTSeq-DESeq. This may be simple, however, I am no expert. I have 6 .txt files in a directory called htseqresults. Within that directory, I go to R (by typing R). The following is what I attempted:
>library(DESeq)
> datafile<-system.file(path="/home/work/HTSeq/htseqresults")
> datafile
[1] ""
I attempted to use the Differential expression of RNA-Seq data at the gene level –the DESeq package. The data is not stored in my computer, instead is stored in the server. How will I be able to import these 6 .txt files? Is it possible to do collectively? Do I have to import each at one time?
Please help.
AH
I am having an issue with importing my information(6 .txt files) within the directory using Linux and R. The pipeline that I am using is TopHat-HTSeq-DESeq. This may be simple, however, I am no expert. I have 6 .txt files in a directory called htseqresults. Within that directory, I go to R (by typing R). The following is what I attempted:
>library(DESeq)
> datafile<-system.file(path="/home/work/HTSeq/htseqresults")
> datafile
[1] ""
I attempted to use the Differential expression of RNA-Seq data at the gene level –the DESeq package. The data is not stored in my computer, instead is stored in the server. How will I be able to import these 6 .txt files? Is it possible to do collectively? Do I have to import each at one time?
Please help.
AH
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