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  • Some questions about KO classification

    Hello, I have some questions about the KO classification.

    I have a KO function abundance table. It will give me the basic level of KO funcitons ( the lowest level). Results like this:

    #OTU ID Sample1

    K01365 0
    K01364 0
    K01361 17
    K01360 0
    K01362 70832

    KEGG database has higher levels of categories, which give me level 1, 2, 3.

    For example I am interested in level 3, nitrogen metabolism category

    I want to filter out all the KO functions related to nitrogen metablism

    I want to create a table like this

    #OTU ID Sample2
    Nitrogen metabolism K0111 2
    Nitrogen metabolism K0112 20
    Nitrogen metabolism K0112 3000

    This will help me to extract the functions that I am interested in. Anyone knows how to do this? -- extract all functions related to a category.

    Also, I want to know the gene name of the KO funcitons.

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