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  • problem of gbrowse

    Hi,everyone

    I have installed the gbrowse2.03, and using a .bam files to plot the base coverage in gbrowse, and my problem: the junction region (which should be intron, and supported by junction reads) in my gbrowse are also ploted, it looks like the gbrowse set the junction reads as completely matched reads (including the junction region).

    how can i do for this?

    and an another question, how can is make gbrowse show the junction reads dashed in the junction region?
    Last edited by jiexiong; 12-19-2010, 10:09 PM. Reason: wrong words

  • #2
    I'd try asking on the GB mailing[1-3] list or in the GMod chat room[4].


    Dan.

    [1] "Gbrowse (E-mail)" <[email protected]>,
    [2] http://gmod.org/wiki/GMOD_Mailing_Lists
    [3] https://lists.sourceforge.net/lists/...o/gmod-gbrowse
    [4] irc://irc.perl.org/#gmod
    Homepage: Dan Bolser
    MetaBase the database of biological databases.

    Comment


    • #3
      Does anyone know how to install GBrowse on windows?

      I have prerequisits: apache web server and perl 5.16.3.1603 installed.

      Thank you in adance,
      Navi

      Comment


      • #4
        Hi Navi,

        Did you follow the GBrowse 2 installation guide?

        Comment

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