Syndicated from PubMed RSS Feeds
Single-tube linear DNA amplification for genome-wide studies using a few thousand cells.
Nat Protoc. 2012;7(2):328-38
Authors: Shankaranarayanan P, Mendoza-Parra MA, van Gool W, Trindade LM, Gronemeyer H
Abstract
Linear amplification of DNA (LinDA) by T7 polymerase is a versatile and robust method for generating sufficient amounts of DNA for genome-wide studies with minute amounts of cells. LinDA can be coupled to a great number of global profiling technologies. Indeed, chromatin immunoprecipitation coupled to massive parallel sequencing (ChIP-seq) has been achieved for transcription factors and epigenetic modification of chromatin histones with 1,000 to 5,000 cells. LinDA largely simplifies reChIP-seq experiments to monitor co-binding at chromatin target sites. The single-tube design of LinDA is ideal for handling ultrasmall amounts of DNA (
Single-tube linear DNA amplification for genome-wide studies using a few thousand cells.
Nat Protoc. 2012;7(2):328-38
Authors: Shankaranarayanan P, Mendoza-Parra MA, van Gool W, Trindade LM, Gronemeyer H
Abstract
Linear amplification of DNA (LinDA) by T7 polymerase is a versatile and robust method for generating sufficient amounts of DNA for genome-wide studies with minute amounts of cells. LinDA can be coupled to a great number of global profiling technologies. Indeed, chromatin immunoprecipitation coupled to massive parallel sequencing (ChIP-seq) has been achieved for transcription factors and epigenetic modification of chromatin histones with 1,000 to 5,000 cells. LinDA largely simplifies reChIP-seq experiments to monitor co-binding at chromatin target sites. The single-tube design of LinDA is ideal for handling ultrasmall amounts of DNA (