I aligned RNAseq reads and ran cuffmerge then cuffdiff on the transcripts.gtf file, with a mouse genome annotation from UCSC.
Everything...
24 results in 0.0022 seconds.
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cummeRbund / cuffdiff output
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VCF file from mouse data
Hi everyone,
I am very new to the field of NGS and bioinformatics. I have obtained the VCF file for the mouse strains that Sanger Institute... -
Where to get mouse training set (hapmap/omni) for GATK:VariantRecalibrator
I was calling SNP on mouse samples using GATK and was in the step of "Variant quality score recalibration". The VariantRecalibrator walker asked... -
whole genome sequencing of mouse genome
Hi all,
Does anybody know what is the number of reads (and what coverage per base) which are needed for sequencing of mouse whole genome... -
Liftover on Mouse dbsnp
I find the latest version of dbsnp for mouse from the UCSC database is based on the mm9 reference. I'm trying to do a liftover of this file to the reference... -
mouse bone marrow rna-seq data
I'm new to the forum, so my apologies if there is a better place for this question.
I am looking for rna-seq data from mouse bone marrow.... -
bowtie_build input help
Hello all,
What is the proper data to use with bowtie_build if I would like to build my own index for the latest mouse genome? For example,... -
3 NGS analysis jobs at the Australian National University
The John Curtin School of Medical Research at the Australian National University, through its Immunogenomics Laboratory and Australian Phenomics Faci... -
Aligning mRNA against Riken database
I am volunteering in a lab and have been tasked with analysis of some sequences of short mRNA fragments. In a previous life I was a programmer but I...
